Microbiome Editing Technologies

Masquerading microbial pathogens: capsular polysaccharides mimic host-tissue molecules
BF Cress, JA Englaender, W He, D Kasper, RJ Linhardt, MAG Koffas
FEMS microbiology reviews 38 (4), 660-697
BF Cress, OD Toparlak, S Guleria, M Lebovich, JT Stieglitz, ...
ACS synthetic biology 4 (9), 987-1000
CRISPR-CasΦ from huge phages is a hypercompact genome editor
P Pausch, B Al-Shayeb, E Bisom-Rapp, CA Tsuchida, Z Li, BF Cress, ...
Science 369 (6501), 333-337
CRISPRi-mediated metabolic engineering of E. coli for O-methylated anthocyanin production
BF Cress, QD Leitz, DC Kim, TD Amore, JY Suzuki, RJ Linhardt, ...
Microbial Cell Factories 16 (1), 1-14
JA Englaender, JA Jones, BF Cress, TE Kuhlman, RJ Linhardt, ...
ACS Synthetic Biology 6 (4), 710-720
Sensitive cells: enabling tools for static and dynamic control of microbial metabolic pathways
BF Cress, EA Trantas, F Ververidis, RJ Linhardt, MAG Koffas
Current opinion in biotechnology 36, 205-214
BF Cress, JA Jones, DC Kim, QD Leitz, JA Englaender, SM Collins, ...
Nucleic acids research 44 (9), 4472-4485
Species-and site-specific genome editing in complex bacterial communities
BE Rubin*, S Diamond*, BF Cress*, A Crits-Christoph, YC Lou, AL Borges, ...
Nature Microbiology, 1-14
Controlling and enhancing CRISPR systems
H Shivram, BF Cress, GJ Knott, JA Doudna
Nature chemical biology 17 (1), 10-19
Draft genome sequence of Escherichia coli strain Nissle 1917 (serovar O6: K5: H1)
BF Cress, RJ Linhardt, MAG Koffas
Genome announcements 1 (2), e00047-13
R Wang, BF Cress, Z Yang, JC Hordines III, S Zhao, GY Jung, Z Wang, ...
ACS Synthetic Biology 8 (9), 2121-2130
Tailor-made exopolysaccharides—CRISPR-Cas9 mediated genome editing in Paenibacillus polymyxa
M Rütering, BF Cress, M Schilling, B Rühmann, MAG Koffas, V Sieber, ...
Synthetic Biology 2 (1), ysx007
Structural basis for AcrVA4 inhibition of specific CRISPR-Cas12a
GJ Knott, BF Cress, JJ Liu, BW Thornton, RJ Lew, B Al-Shayeb, ...
elife 8, e49110
Heavy heparin: a stable isotope‐enriched, chemoenzymatically‐synthesized, poly‐component drug
BF Cress*, U Bhaskar*, D Vaidyanathan, A Williams, C Cai, X Liu, L Fu, ...
Angewandte Chemie 131 (18), 6023-6027
Synthesis and biological evaluation of 5, 7-dihydroxyflavanone derivatives as antimicrobial agents
X Zhang, O Khalidi, SY Kim, R Wang, V Schultz, BF Cress, RA Gross, ...
Bioorganic & medicinal chemistry letters 26 (13), 3089-3092
A Sarnaik, MH Abernathy, X Han, Y Ouyang, K Xia, Y Chen, B Cress, ...
Algal Research 37, 57-63
N Bhan, BF Cress, RJ Linhardt, M Koffas
Biochimie 115, 136-143
Magnesium starvation improves production of malonyl-CoA-derived metabolites in Escherichia coli
K Tokuyama, Y Toya, F Matsuda, BF Cress, MAG Koffas, H Shimizu
Metabolic engineering 52, 215-223
T Ito, M Murai, S Ninokura, Y Kitazumi, KG Mezic, BF Cress, MAG Koffas, ...
Journal of Biological Chemistry 292 (19), 7727-7742
Draft Genome Sequence of Escherichia coli Strain ATCC 23506 (Serovar O10:K5:H4)
BF Cress, ZR Greene, RJ Linhardt, MAG Koffas
Genome Announcements 1 (2), 1-2
A Williams, W He, BF Cress, X Liu, J Alexandria, H Yoshizawa, ...
Biotechnology journal 12 (10), 1700239
Draft genome sequence of Pseudoalteromonas luteoviolacea strain B (ATCC 29581)
BF Cress, KA Erkert, B Barquera, MAG Koffas
Genome announcements 1 (2), e00048-13
Isoflavonoid Production by Genetically Engineered Microorganisms
BF Cress, RJ Linhardt, MAG Koffas
Handbook of Natural Products, 1647-1681
A CRISPR-Cas9–integrase complex generates precise DNA fragments for genome integration
S Jakhanwal, BF Cress, P Maguin, MJ Lobba, LA Marraffini, JA Doudna
Nucleic acids research 49 (6), 3546-3556
Heparin's solution structure determined by small‐angle neutron scattering
KA Rubinson, Y Chen, BF Cress, F Zhang, RJ Linhardt
Biopolymers 105 (12), 905-913
RNA aptamers with specificity for heparosan and chondroitin glycosaminoglycans
M Kizer, P Li, BF Cress, L Lin, TT Jing, X Zhang, K Xia, RJ Linhardt, ...
ACS omega 3 (10), 13667-13675
RNA-targeting CRISPR-Cas13 Provides Broad-spectrum Phage Immunity
BA Adler, T Hessler, BF Cress, VK Mutalik, R Barrangou, J Banfield, ...
bioRxiv
Complete Biosynthesis of Anthocyanins Using E. coli Polycultures
JA Jones, VR Vernacchio, SM Collins, AN Shirke, Y Xiu, JA Englaender, ...
MBio 8 (3), e00621-17
PB Otoupal, BF Cress, JA Doudna, JS Schoeniger
Nucleic acids research 50 (15), 8986-8998
Combinatorial CRISPRi Expedites Microbial Metabolic Engineering
BF Cress, KK Farrell, QD Leitz, RJ Linhardt, M Koffas
2017 AIChE Annual Meeting
BF Cress Rensselaer Polytechnic Institute